Cell Biomechanics / Cell Mechanics / Mechanobiology
Siavash Mazdeyasna; Amir Homayoun Jafari
Volume 5, Issue 3 , June 2011, , Pages 181-192
Abstract
In this paper, two models are introduced based on cellular automata and the game theory to study behavior, growth, development and morphology of cancerous cells by assuming nutrition supplies, extracellular matrix, and immune cells. A two-dimensional cellular automaton combine with game theory is considered ...
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In this paper, two models are introduced based on cellular automata and the game theory to study behavior, growth, development and morphology of cancerous cells by assuming nutrition supplies, extracellular matrix, and immune cells. A two-dimensional cellular automaton combine with game theory is considered as the structure of model. The cellular automata modeling framework can be an efficient approach to a number of biological problems; and game theory aims to help us to understand situations in which decision-makers interact such as competitive activity. In the first model, we consider different oxygen supplies to study the growth and invasion of cancerous cell. The results of our simulation are validated by the results of other articles. The results show that the number of cancerous cells is easily changed by changing amount of oxygen supplies, but invasive distance of tumor cells is not easily affected by this factor. Furthermore the results of this model are not linear, that could show the improvement of the model. In addition, this model has the ability of producing metastasis, as it is shown. In the second model, the interaction between immune cells and cancerous cells are considered. Two-dimensional cellular automata and game theory are used for this purpose. In this model the behavior of cellular automata is determined by the game theory. The rules of cellular automata are determined by game theory table, so each element of the system could make a decision separately.
Cardiovascular Biomechanics
Mehdi Molaei; Mohammad Saeid Saeidi; Bahar Firoozabadi
Volume 5, Issue 4 , June 2011, , Pages 279-288
Abstract
Study of Physiological Parameters of the Cardiovascular System by One Dimensional and Numerical Simulation. Owning to important role of the cardiovascular system in the human body and increase of cardiovascular diseases from day to day, in this study, we try to simulate a system of arteries by using ...
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Study of Physiological Parameters of the Cardiovascular System by One Dimensional and Numerical Simulation. Owning to important role of the cardiovascular system in the human body and increase of cardiovascular diseases from day to day, in this study, we try to simulate a system of arteries by using one dimensional numerical modeling. For the first time in the one dimensional simulation, we use the finite volume method for discretization of Navier-Stocks equations coupled with the state equation. In order to develop the outflow boundary condition, we use a kind of lumped model called arteriole structure tree. Results of this study are verified by results of other one dimensional modeling such as the characteristic method and are showed that finite volume method is able to demonstrate characteristic of blood flow in arteries. Normal pressure and flow profiles in main systemic arteries are determined, and it is founded that the pressure profile becomes steeper with distance from the heart, which is in agreement with physiological patterns. Furthermore, we can show that when elasticity of arteries is increased in arterioscleroses disease, systolic pressure increases, yet diastolic pressure decreases. Finally, according to available results, it is clear that the finite volume method is useful to simulate numerically and one dimensionally the cardiovascular system.
Biomechanics of Bone / Bone Biomechanics
Mohammad Mehdi Khani; Mohammad Tafazzoli Shadpour; Farzane Aghajani; Peyman Naderi
Volume 5, Issue 1 , June 2011, , Pages 13-20
Abstract
Stress analysis is a proper tool in evaluation of vulnerable regions of dental tissues exposed to cyclic loading due to mastication and other physiological functions. In this study, effects of visco-elastic property of dental components on the distribution of stress are investigated in finite element ...
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Stress analysis is a proper tool in evaluation of vulnerable regions of dental tissues exposed to cyclic loading due to mastication and other physiological functions. In this study, effects of visco-elastic property of dental components on the distribution of stress are investigated in finite element models of upper central tooth prone to dynamic loading. Sensitivity of stress pulse to the visco-elastic property is studied. Results indicate reduction of stress pulse amplitude by elevation of visco-elastic parameter with highest effect in enamel-cementum junction and then in enamel-dentin junction. The visco-elastic property causes smoothening of the stress distribution in dental tissues. Such effect is due to reduction of stress wave amplitude and elevation of the ratio of minimum to maximum stress values. Increased visco-elasticity of components results in elevated phase shift between load and stress waves and higher attenuation of stress wave. This causes slow propagation of attenuated wave leading to lower maximum stress after reflection of stress wave in boundaries and junctions.
Biomechanics of Bone / Bone Biomechanics
Mohammad Nikkhoo; Mohammad Haghpanahi; J. L. Wang; Mohammad Parnianpour
Volume 5, Issue 1 , June 2011, , Pages 21-32
Abstract
Prediction of the relationship between different types of mechanical loading and the failure of the intervertebral disc is so important to identify the risk factors which are difficult to study in vivo and in vitro. On the basis of finite element methods some of these issues may be overcome ...
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Prediction of the relationship between different types of mechanical loading and the failure of the intervertebral disc is so important to identify the risk factors which are difficult to study in vivo and in vitro. On the basis of finite element methods some of these issues may be overcome enabling more detailed assessment of the biomechanical behavior of the intervertebral disc. The objective of this paper is to develop a nonlinear axisymmetric poroelastic finite element model of lumbar motion segment and show its capability for studying the time-dependent response of disc. After comparison of the response of different models in quasi-static analysis, the poroelastic model of intervertebral disc is presented and the results of short-term, long-term creep tests and cyclic loading were investigated. The results of the poroelastic model are in agreement with experimental ones reported in the literature. Hence, this model can be used to study how different dynamic loading regimes are important as risk factors for initiation of intervertebral disc degeneration.
Biomechanics of Bone / Bone Biomechanics
Behnoud Haghighi; Masoud Tahani; Gholam Reza Rouhi
Volume 5, Issue 1 , June 2011, , Pages 33-44
Abstract
Orthopedic screws are widely used devices for fixation of bone fractures. Progressive loosening of bone fixation screws, induced by stress shielding and subsequent adaptive bone remodeling, results in bone loss around the screw. A set of two-dimensional finite element models including cortical and cancellous ...
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Orthopedic screws are widely used devices for fixation of bone fractures. Progressive loosening of bone fixation screws, induced by stress shielding and subsequent adaptive bone remodeling, results in bone loss around the screw. A set of two-dimensional finite element models including cortical and cancellous bone with a functionally graded Ti-Hap screw was developed. A dimensionless set of stress-transfer parameters (STP) and strain energy density-transfer parameter (SEDTP) were developed to quantify the screw–bone load sharing. Lower STP and SEDTP values indicate weak stress and strain energy density transfer to bone which is a sign of stress shielding. The results indicated that STP and SEDTP values for FGM screw are higher than those of a fully metal screw. Moreover, reducing elastic modulus of metal fraction and increasing the volume fraction of ceramic decrease the stress shielding. For a partially graded screw (with both homogenous and FGM parts), the longer FGM part is, the greater are STP and SEDTP values. Furthermore, the results showed that decreasing compositional distribution exponent which shows composition change of FGM content from metal fraction toward ceramic fraction, increases the parameters. Results from this study are in admissible agreement with available clinical and experimental study.
Fluid-Structure Interaction in Biological Media / FSI
Borhan Alhoseini Hamedani; Mehdi Navidbakhsh; Hosein Ahmaditafti
Volume 5, Issue 1 , June 2011, , Pages 45-56
Abstract
In this paper, study of mechanical properties of human blood vessels is considered, especially those of related to the Coronary Artery Bypass Graft (CABG). Unfortunately more than 30% of saphenous grafts are re-occluded within 10 years while mammary artery shows better results. In this study elastomechanical ...
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In this paper, study of mechanical properties of human blood vessels is considered, especially those of related to the Coronary Artery Bypass Graft (CABG). Unfortunately more than 30% of saphenous grafts are re-occluded within 10 years while mammary artery shows better results. In this study elastomechanical properties of human saphenous vein, which is common in CABG, is studied. Stress-stretch behavior of these samples after a cyclic loading was obtained and large deformation formulation was used to obtain real stress and stretch ratio of these vessels. Then a fourth order polynomial was used to show nonlinear behavior of these results. Results show that blood vessel stiffness in longitudinal direction is two times greater than circumferential direction, while it is more than 74% stretchable in the circumferential direction. So modulus of elasticity in longitudinal direction is greater than circumferential direction. If we continue stretching until final rupture after maximum strength, longitudinal samples will be broken down faster than circumferential samples because of collagen fibers orientation.
Cardiovascular Biomechanics
Hamed Khalesi; Hanie Niroomand Oscuii; Farzan Ghalichi
Volume 5, Issue 2 , June 2011, , Pages 143-149
Abstract
Prediction of the relationship between different types of mechanical loading and the failure of the intervertebral disc is so important to identify the risk factors which are difficult to study in vivo and in vitro. On the basis of finite element methods some of these issues may be overcome enabling ...
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Prediction of the relationship between different types of mechanical loading and the failure of the intervertebral disc is so important to identify the risk factors which are difficult to study in vivo and in vitro. On the basis of finite element methods some of these issues may be overcome enabling more detailed assessment of the biomechanical behavior of the intervertebral disc. The objective of this paper is to develop a nonlinear axisymmetric poroelastic finite element model of lumbar motion segment and show its capability for studying the time-dependent response of disc. After comparison of the response of different models in quasi-static analysis, the poroelastic model of intervertebral disc is presented and the results of short-term, long-term creep tests and cyclic loading were investigated. The results of the poroelastic model are in agreement with experimental ones reported in the literature. Hence, this model can be used to study how different dynamic loading regimes are important as risk factors for initiation of intervertebral disc degeneration.
Biomedical Image Processing / Medical Image Processing
Maryam Momeni; Hamid Abrishami Moghaddam; Reinhard Grebe; Kamran Kazemi; Fabrice Wallois
Volume 5, Issue 3 , June 2011, , Pages 231-244
Abstract
Reliable gradation of neonatal brain development is important for clinical investigation of neurological disorders. A prerequisite for such quantification of development is knowledge about an appropriate temporal resolvability. For this purpose, we investigated the evolution of macroscopic morphological ...
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Reliable gradation of neonatal brain development is important for clinical investigation of neurological disorders. A prerequisite for such quantification of development is knowledge about an appropriate temporal resolvability. For this purpose, we investigated the evolution of macroscopic morphological features of the neonatal brain to estimate, for the first time, the required temporal interval in the early weeks after birth. In a first step, we constructed two neonatal templates for the age ranges of 39-40 and 41- 42 weeks' gestational age using T1-weighted MR images. We compared the spatial variation of anatomical landmarks and the average and the maximal length of spatial deformation in 25 subjects normalized to the two templates along x, y and z directions. MANOVA confirmed the significant difference between spatial variations of the above macroscopic features in the two age ranges. Furthermore, quantitative analysis of feature scattering yielded the same result even in features for which the null hypothesis was not rejected by MANOVA. We conclude that minimal temporal interval of two weeks is required for acute macroscopic morphological studies of the developing brain in the early weeks after birth.
Fluid-Structure Interaction in Biological Media / FSI
Hamed Khalesi; Hanie Niroomand Oscuii; Farzan Ghalichi
Volume 5, Issue 1 , June 2011, , Pages 67-78
Abstract
Biomechanics believe that, the arteries are remodeled under the influence of hemodynamic and mechanical factors. Biomechanical factors such as Opening Angle and the Tethering could have important effects on this phenomenon. The effects of various Opening Angle and Tethering during thoracic aorta aging ...
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Biomechanics believe that, the arteries are remodeled under the influence of hemodynamic and mechanical factors. Biomechanical factors such as Opening Angle and the Tethering could have important effects on this phenomenon. The effects of various Opening Angle and Tethering during thoracic aorta aging on arterial wall stress have been studied. ADINA software is used for numerical simulation.In this study, for the first time, numerical methods of Fluid-Structure Interaction have been used to study and simulate effects of Opening Angle and the Tethering in elastic artery remodeling due to age. Large deformation theory has been used for modeling changes of arterial radius; furthermore, behavior of Newtonian fluid has been used for blood. Pulsatile pressure and physiological Pulsatile flow waveforms have been applied to simulate transient behavior of arterial system. The results show that opening angle has further effect on circumferential stress so smooth distribution of circumferential stress on the wall accrued. Also, increasing Opening Angle with age reverses the circumferential stress distribution slop across the arterial wall. Tethering has further effect on axial stress. Decreasing Tethering in remodeling process over age leads to increase stress levels in the aged artery. Also, arterial wall shear stress in remodeled artery shows significant reduction in maximum, mean and amplitude values that caused reduction of pathological effects of endothelial cells.
Biological Computer Modeling / Biological Computer Simulation
Mahmoud Amiri; Fariba Bahrami; Mahyar Janahmadi
Volume 4, Issue 2 , June 2010, , Pages 83-96
Abstract
Based on the neurophysiologic findings, astrocytes provide not only structural and metabolic supports for the nervous system but also they are active partners in neuronal activities and synaptic transmissions. In the present study, we improved two biologically plausible cortical and thalamocortical neural ...
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Based on the neurophysiologic findings, astrocytes provide not only structural and metabolic supports for the nervous system but also they are active partners in neuronal activities and synaptic transmissions. In the present study, we improved two biologically plausible cortical and thalamocortical neural population models (CPM and TCPM), which were developed previously by Suffczynski and colleagues, by integrating the functional role of astrocytes in the synaptic transmission in the models. In other words, the original CPM and TCPM are modified to integrate neuronastrocyte interaction considering the idea of internal feedback proposed by Iasemidis and collaborators. Using the modified CPM and TCPM, it is demonstrated that healthy astrocytes provide appropriate feedback control for regulating the neural activities. As a result, we observed that the astrocytes are able to compensate for the variations in the cortical excitatory input and maintain the normal level of synchronized behavior. Next, it is hypothesized that malfunction of astrocytes in the regulatory feedback loop can be one of the probable causes of seizures. That is, pathologic astrocytes are not any more able to regulate and/or compensate the excessive increase of the cortical excitatory input. Consequently, disruption of the homeostatic or signaling function of astrocytes may initiate the hypersynchronous firing of neurons. Our results confirm the hypothesis and suggest that the neuronastrocyte interaction may represent a novel target to develop effective therapeutic strategies to control seizures.
Bioheat Transfer
Seyed Alireza Zolfaghari; Mehdi Maerefat; Amir Omidvar
Volume 4, Issue 1 , June 2010, , Pages 13-21
Abstract
Generally, most of the human thermal response models are dependent upon a narrow range of personal/environmental parameters. In other words, the effects of other parameters such as eating foods are not considered in these models. On the other hand, previous studies have indicated that the overall thermal ...
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Generally, most of the human thermal response models are dependent upon a narrow range of personal/environmental parameters. In other words, the effects of other parameters such as eating foods are not considered in these models. On the other hand, previous studies have indicated that the overall thermal condition of the body can be significantly affected by eating cold or hot foods. In the present study, the time-dependent thermal response of the human body is simulated with considering the effect of eating hot/cold food. This simulation is performed by adding an extra term to Gagge’s transient model. In this study, three thermal conditions of the human body (hot, neutral and cold) are considered and the effects of eating hot/cold food are investigated under the mentioned conditions. Results indicate that the effects of eating hot or cold food are not negligible during the eating time and also in a period of time after that. At the neutral condition, the human thermal sensation is more sensitive to hot food than to cold ones. Eating hot food changes the body thermal sensation from neutral to hot. But, eating cold food would not make significant changes in the thermal sensation of the body. Results also show that cold food changes the body core temperature more than hot food. While hot food influences the skin temperature significantly.
Cell Biomechanics / Cell Mechanics / Mechanobiology
Seyed Abed Hosseini; Mohammad Ali Khalilzadeh; Seyed Mehran Homam
Volume 4, Issue 1 , June 2010, , Pages 23-31
Abstract
Various stressful stimuli have different effects on health, decision making, creativity, learning and memory. Understanding human mental states such as stress can prevent its long-term side effects on the body and mind. This study deals with the responses of the neural and hormonal systems to stress ...
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Various stressful stimuli have different effects on health, decision making, creativity, learning and memory. Understanding human mental states such as stress can prevent its long-term side effects on the body and mind. This study deals with the responses of the neural and hormonal systems to stress using the brain cognitive map in this state and simulates the behavior of the CA1 cell calcium channels with electrophysiological equations in the NEURON software. During stress, the glucocorticoids hormones secreted by the adrenal gland cortex reach the hippocampus through blood flow and by activating glucocorticoids receptors, influence the calcium channels dynamics, especially the L-type and increase calcium entry into CA1 cells. This behavior, testify to the reduction of the calcium removal rate in the cells which leads to exponential decrease in cells firing rate and number of spikes and an increase in the sAHP current range. L-type calcium currents in hippocampus region are effective mechanisms during stress. Comparing the research results in two situations, the cell under control and the cell under stress, shows that the model is consistent with some basic observations of stress.
Targeted Drug Delivery / Smart Drug Delivery / Drug Targeting
Nadia Naghavi; Amene Sazgarnia; Mohammad Hossein Miranbaygi
Volume 4, Issue 3 , June 2010, , Pages 209-218
Abstract
Today, the idea of photodynamic therapy (PDT) is considered as one of the fundamental basis of the new cancer treatment methods. One of the important issues in the application of this therapy is choosing the optimal dosimetry method. At best, PDT dosimetry should be done based on estimation of the accumulated ...
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Today, the idea of photodynamic therapy (PDT) is considered as one of the fundamental basis of the new cancer treatment methods. One of the important issues in the application of this therapy is choosing the optimal dosimetry method. At best, PDT dosimetry should be done based on estimation of the accumulated singlet oxygen dose within the target tissue and comparison with the threshold value to ensure the efficacy of the treatment. In order to estimate the accumulated singlet oxygen level within the tissue, the most appropriate method is modeling the process of treatment. In this context, it is necessary to obtain enough information about the drug concentration within the target tissue, the amount of light absorbed by the drug, the amount of oxygen into the tissue, and the interactions between them that produce singlet oxygen. In this study modeling and simulation of the photobleaching has been investigated, considering the importance of the level of drug concentration in the target tissue which would be decreased by photobleaching. Simulation was done with Matlab software. A Comparison of simulation results with those of experimental methods showed that in the state of non-uniform drug distribution, simulation follows experimental results at the initial phase of rapid decline of drug concentration.
Cell Biomechanics / Cell Mechanics / Mechanobiology
Seyed Hojat Sabzpoushan; Fateme Pourhasan Zadeh; Azar Badangiz
Volume 4, Issue 1 , June 2010, , Pages 45-52
Abstract
The heart tissue is an excitable media. Cellular Automata is an approach describing cardiac action potential propagation. One of the advantages of Cellular Automata approach over the differential equations based models is its high speed in large scale simulations. Prior Cellular Automata models are not ...
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The heart tissue is an excitable media. Cellular Automata is an approach describing cardiac action potential propagation. One of the advantages of Cellular Automata approach over the differential equations based models is its high speed in large scale simulations. Prior Cellular Automata models are not able to eliminate flat edges in the simulated patterns or have large neighborhoods. Moreover, they are not able to match the shape of ventricular action potential to the real ones. In this paper, we present a new model which prevents flat edges creation by using minimum number of neighbors. we also rather preserve the real shape of action potential by using linear curve fitting of a well known electrophysiological model.
Biomedical Image Processing / Medical Image Processing
Maede Hadinia; Reza Jafari
Volume 4, Issue 4 , June 2010, , Pages 317-326
Abstract
This paper presents image reconstruction in Diffuse Optical Tomography (DOT) using a high-order finite element method. DOT is a non-invasive imaging modality for visualizing and continuously monitoring tissue and blood oxygenation levels in brain and breast. Image reconstruction in DOT leads to an inverse ...
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This paper presents image reconstruction in Diffuse Optical Tomography (DOT) using a high-order finite element method. DOT is a non-invasive imaging modality for visualizing and continuously monitoring tissue and blood oxygenation levels in brain and breast. Image reconstruction in DOT leads to an inverse problem consisting of a forward problem and an iterative algorithm. The inverse problem in DOT systems is ill posed and depends on the accuracy of the forward problem. An accurate model, that describes the light transmission in tissue is required and can increase the spatial resolution. Using first order finite elements in the forward problem, numerical results are converged to the exact solution with increasing the number of elements. However, increasing the number of elements may cause a critical issue in the ill-posed inverse problem. This paper focuses on applying the high-order finite element method without increasing the number of elements, and image reconstruction is accomplished. The forward problem results are compared with analytical solutions. Images of absorbers reconstructed using this method are presented.
Cardiovascular Biomechanics
Ahmad Ramezani Saadatabadi; Majid Ahmadlouy Darab; Farzan Ghalichi; Ataollah Kamyabi
Volume 4, Issue 1 , June 2010, , Pages 65-72
Abstract
This study aimed to simulate three dimensional pulsatile Newtonian blood flow in End-to-Side anastomosis of Aorta-coronary bypass using ascending aorta velocity flow wave as graft inlet and left anterior descending coronary artery (LAD) velocity flow wave as coronary inlet for 50% symmetric stenosis. ...
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This study aimed to simulate three dimensional pulsatile Newtonian blood flow in End-to-Side anastomosis of Aorta-coronary bypass using ascending aorta velocity flow wave as graft inlet and left anterior descending coronary artery (LAD) velocity flow wave as coronary inlet for 50% symmetric stenosis. We have supposed that LAD walls were rigid and had no spatial mobility due to heart beats. In order to investigate the graft angles effects on blood flow, especially on the wall shear stress magnitudes, 20, 30 and 40 degrees graft angles were used. Using ascending aorta and LAD pulses simultaneously as boundary conditions for the first time is one of the important features of this study because already these boundary conditions have not been used simultaneously. We considered prograde flow effects. Appearance of recirculation flows in various degrees of grafting angles, existence of secondary flows and increased in their effects specially in pulses deceleration phase, existence of double core helical flows and increase in their intensify specially at the systole peak and the rise in the spatial wall shear stress gradient by increasing in the graft angle are some of important results of this study. Finally, according to our assumptions we suggest 20 to 30 degrees as desired angles for grafting.
Tissue Engineering
Fateme Shamsi; Mohsen Janmaleki; Nasser Fatouraee
Volume 3, Issue 4 , June 2009, , Pages 265-274
Abstract
In this study a mechanism was modeled to control the jet path of nanofibers produced by electrospinning through inducing a magnetic field over the jet path. Firstly, a model was developed for the jet path in which the fibers composed of a series of viscoelastic segments. Considering the mass and momentum ...
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In this study a mechanism was modeled to control the jet path of nanofibers produced by electrospinning through inducing a magnetic field over the jet path. Firstly, a model was developed for the jet path in which the fibers composed of a series of viscoelastic segments. Considering the mass and momentum conservation and maxwellian model of stretching viscoelastic segments using three equations governing the jet dynamics of the jet model in electrospinning, a program was developed in MATLAB with Runge–Kutta method. After ensuring the accuracy of the model, its behavior was evaluated in the presence of a magnetic field. The field induced a uniform force distribution over the jet. As the intensity of the magnetic field increased; the instability and bending radius of the jet reduced. The results of the research showed that utilizing a suitable mechanism for applying magnetic field can provide help in controlling the jet path and alignment of the nanofibers.
Bioheat Transfer
Mehdi Maerefat; Manije Mokhtari Dizaji; Zahra Haddad Soleimani
Volume 3, Issue 3 , June 2009, , Pages 189-197
Abstract
In this paper a comprehensive mathematical model for thermal analysis of liver tissue in thermotherapy of liver cancer by laser is presented. In the present model the diffusion approximation analytical method for radiative heat transfer modeling of heat transfer process in the tissue is used for the ...
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In this paper a comprehensive mathematical model for thermal analysis of liver tissue in thermotherapy of liver cancer by laser is presented. In the present model the diffusion approximation analytical method for radiative heat transfer modeling of heat transfer process in the tissue is used for the first time. Heat transfer modeling in the biological tissue is carried out using Penes model taking into account the influence of thermal and blood perfusion coefficient fluctuations due to temperature changes as well as the effect of lipid melting on temperature distribution through enthalpy method is taken into account. In the present study the tumor is considered as a sphere with thermo-physical properties different with those of healthy tissue. Finally, the obtained non-linear equations are solved using the numerical finite volume method. Temperature distribution at several instants during the thermotherapy is calculated. The comparison of the calculated results with those of experimental results indicate a good agreement between the results. Furthermore, the effects of different parameters such as laser specifications and optic coefficient changes (through proper photopherin injection) on laser-affected area are studied using the present analytical method. These results can help the specialists in order to come upon a safe LITT method for destruction of cancerous tissues without harming the healthy ones.
Tissue Engineering
Mehdi Navidbakhsh; Milade Jafarnejad
Volume 3, Issue 4 , June 2009, , Pages 299-306
Abstract
The cancer changes the cytoskeleton of the cells .This change has some effects on the cell mechanobiology and will lead to some changes in the deformability of the cells. The moving ability of the cancer cells would be more than healthy cells. Thus, they can migrate through the tissue in human body. ...
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The cancer changes the cytoskeleton of the cells .This change has some effects on the cell mechanobiology and will lead to some changes in the deformability of the cells. The moving ability of the cancer cells would be more than healthy cells. Thus, they can migrate through the tissue in human body. In this survey, a valid FEM of a cancer cell is presented. Then the effects of various factors such as membrane thickness, elasticity, strain, and frequency response are studied during a process of being converted from normal cells into cancerous malignant cells. Besides, the initial mathematical models are provided. The results clarify that an increase in membrane elasticity, strain, and frequency would lead to increase in the reaction force. However, an increase in the membrane thickness decreases the reaction force.
Biological Computer Modeling / Biological Computer Simulation
Siamak Haghipour; Seyed Mohammad Reza Hashemi Golpayegani; Seyed Mohammad Firouzabadi; Sirous Momenzadeh
Volume 3, Issue 3 , June 2009, , Pages 227-241
Abstract
The procedure of pain formation embarks on primary sensory neurons and then ends in central nervous system which is the first stage in the dorsal horn of the spinal cord. Nowadays the great challenge of some researchers for pain control has been to elucidate the mechanisms that are able to switch the ...
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The procedure of pain formation embarks on primary sensory neurons and then ends in central nervous system which is the first stage in the dorsal horn of the spinal cord. Nowadays the great challenge of some researchers for pain control has been to elucidate the mechanisms that are able to switch the state of the dorsal horn of the spinal cord from an unwanted state to a favorite one. In order to achieve such an aim, a model of the function of the dorsal horn of the spinal cord is extracted in order to be able to control the created pains with changing the parameters of the aforementioned model. In this study a cybernetic model is presented with the aid of bifurcation methodologies and reconstructing the dynamics linked with the process of pain formation via clinical experiment that can express different states in the dorsal horn of the spinal cord as normal, suppressed, sensitized, the functionality of memory, the effect of other primary afferents and the effect of descending signals. Input signals in this model consist of thermal stimulation degree proportional to action potential firing rate from Ab afferents, inhibitory descending signals from midbrain and inhibitory or excitatory descending signal from thalamus and cortex and the output signal is the action potential firing rate from transmission cells in dorsal horn of the spinal cord proportional to pain level have been sensed. The significant and remarkable characteristic of this model is applying a cybernetical model based on a sequence of input-output data which can obviate the drawbacks of other models in which simplification and reduction of terms reduce the operation of components of a system. On the other hand, unlike previous models which have been modeled based on membrane (slow) potential, this model is based on the action potential firing rate from transmission cells of the dorsal horn of the spinal cord that has the adaptability with cellular recording as well as having a higher accuracy.
Biomechanics of Bone / Bone Biomechanics
Shahab Mansourbaghaei; Majid Haghayegh; Seyed Mohammad Rajaei
Volume 3, Issue 3 , June 2009, , Pages 243-253
Abstract
An analytical method to predict the response of the inclined impact of a fluid filled elastic spherical shell having an arbitrary thickness with an elastic toroid is investigated in this paper which can be a model for analytical evaluation of blunt impact on the human head. The study is performed under ...
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An analytical method to predict the response of the inclined impact of a fluid filled elastic spherical shell having an arbitrary thickness with an elastic toroid is investigated in this paper which can be a model for analytical evaluation of blunt impact on the human head. The study is performed under a combination of Hertzian contact theory and the local effect of membrane and bending of the shell in order to state the implicit equation to determine the transmitted force. With respect to the analytical responses, it is concluded that transmitted force decreases and contact duration increases by increasing of attack angle in constant initial velocity. In addition, closed form solution is presented to obtain impact parameters including the duration, the maximum transferred load and the maximum acceleration of the shell which particularly important for the researchers. Therefore investigation of the important quantities of the impact problem with closed form solution is possible. On the other hand, limiting cases will be discussed in next step and the concluded results are validated by finite element methods to verify the response of the model. In this step, a good agreement between analytical responses and numerical results is observed that reveals the correctness of analytical equations. In the final step of this research, obtained results are compared with experimental data.
Fluid-Structure Interaction in Biological Media / FSI
Hanie Niroomand Oscuii; Farzan Ghalichi; Mohammad Tafazzoli Shadpour
Volume 2, Issue 1 , June 2008, , Pages 1-8
Abstract
In this paper, we studied the effect of mechanical loading on remodeling process with aging in muscular arteries. Based on the gathered experimental data, the brachial artery was selected for simulation. In this simulation, pulsatile pressure and flow waves were considered as boundary conditions to study ...
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In this paper, we studied the effect of mechanical loading on remodeling process with aging in muscular arteries. Based on the gathered experimental data, the brachial artery was selected for simulation. In this simulation, pulsatile pressure and flow waves were considered as boundary conditions to study the effect of circumferential stress and wall shear stress on the remodeling process. FSI based transient numerical simulation was used to solve the fluid and solid equations. The results of three remodeling schemes showed that inward eutrophic scheme is an optimum algorithm for brachia! Artery remodeling with aging. Such remodeling scheme causes the most optimized outcome to keep circumferential stress with minimal alteration.
Biological Computer Modeling / Biological Computer Simulation
Maryam Naghibolhosseini; Fariba Bahrami
Volume 2, Issue 2 , June 2008, , Pages 75-84
Abstract
This paper proposes a model to learn Farsi handwriting in different sizes based on human behavior. This model copies a human handwritten character with imitation. The imitation includes two stages of perception and action. During the perception, the information that is needed in order to generate the ...
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This paper proposes a model to learn Farsi handwriting in different sizes based on human behavior. This model copies a human handwritten character with imitation. The imitation includes two stages of perception and action. During the perception, the information that is needed in order to generate the character is extracted from the original pattern and during the action, the model generates a character similar to the original one. To rewrite a given character, first it is decomposed into the consecutive strokes. Each stroke is approximated by several linear subdivisions. We considered the slopes and lengths of these subdivisions as the features of a given handwriting. The model learns to write a character by learning to reproduce these features. These features are descriptive of the human handwriting behavior. The learning process becomes complete when all points of the character's trajectory have distance less than a specified distance with the original trajectory. This specified distance describes visual attention and is defined as the attention width. Attention width demonstrates the human accuracy during the different trials of learning. In our model, visual attention is adaptive and decreases as the learning progresses. After the completion of learning, Farsi letters with different sizes can be generated using only memory. In order to evaluate the performance of the model, the correlation between the original and simulated characters is used. The simulation results showed good performance of the model between different Farsi characters.
Biological Computer Modeling / Biological Computer Simulation
Fereshte Yousefi Rizi; Alireza Ahmadian; Javad Alirezaie; Emadoddin Fatemizadeh; Nader Rezaei
Volume 2, Issue 3 , June 2008, , Pages 165-177
Abstract
Partial volume effect and image noise greatly decrease the visibility of the airway wall. Another dilemma with airway segmentation methods, which significantly influences their accuracy, is the leakage into the extra-luminal regions due to thinness of the airway wall during the process of segmentation. ...
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Partial volume effect and image noise greatly decrease the visibility of the airway wall. Another dilemma with airway segmentation methods, which significantly influences their accuracy, is the leakage into the extra-luminal regions due to thinness of the airway wall during the process of segmentation. A solution to this problem in the previous methods was based on leak detection and reduction by adjusting the segmentation parameters and performing the whole segmentation process, which is very time consuming and demands user interaction. The new strategy presented here is to prevent the leakage by taking the advantage of the fact that the airway branches are cylindrically shaped objects. This has been achieved by introducing a new mathematical shape optimization approach embedded in FC-FCM algorithm to retain the cylindrical properties of the airway branches during the segmentation process. The main role of this optimization approach is to detect and correct the underlying voxels which belonging to the airway by satisfying both conditions of the fuzzy connectivity and shape features. The proposed FC-FCM algorithm was first applied on four data sets each containing 430 CT images of CT images of airway tree. The result showed an accuracy of 93% obtained for segmentation of the airway tree up to the fourth generation. We then applied OPT-FC-FCM algorithm to segment the airway tree with optimization process up to the sixth generation of airway. The result proves the ability of our proposed method to complete a visually acceptable segmentation of airway trees with no leakage. The number of detected branches was found 65 (4 times of those obtained by using just the FC-FCM method).
Fluid-Structure Interaction in Biological Media / FSI
Afsane Mojra; Mohammad Tafazzoli Shadpour; Ehsan Yakhshi Tafti
Volume 2, Issue 1 , June 2008, , Pages 9-20
Abstract
Arterial stenosis and the consequent cardiovascular diseases such as atherosclerosis remain the major cause of mortality in the world. In this study, blood flow was analyzed in a three-dimensional model of stenosed carotid artery with asymmetric stenosis utilizing fluid-structure interaction method. ...
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Arterial stenosis and the consequent cardiovascular diseases such as atherosclerosis remain the major cause of mortality in the world. In this study, blood flow was analyzed in a three-dimensional model of stenosed carotid artery with asymmetric stenosis utilizing fluid-structure interaction method. The modeling was performed by ANSYS finite element software. To overcome the software inconsistency in FSI mode, a new code was designed in ANSYS multi-physics environment for coupling of solid and fluid domains via incremental boundary iteration method. The results indicated a considerable variation of local blood pressure, velocity and shear stress in stenosed artery, high pressure drop along stenosis, compressive stress and larger flow separation zone in the post-stenotic region as the result of increased eccentricity of stenosis. The results might be applied in evaluation of plaque severity, progression of disease, plaque growth and vulnerable regions of plaque to fracture.
